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Main functions

Run the ITHIM model - the setting up the environments (variables and loading files), running the model and generating the outputs.

run_ithim()
Wrapper for running ITHIM
run_ithim_setup()
Run the set up scripts for ITHIM

Others

Other functions

add_distance_columns()
Add strike and casualty distances to injury tables
add_ghost_trips()
Addition of ghost trips
add_motorcycle_trips_Chile()
Personal motorcycle trips for Chilean cities
add_trips()
Additional trips for trip data set
add_walk_trips()
Addition of 'walk to public transport' stages to trip set
AP_dose_response()
Calculate relative risk given PM exposure level
ap_dose_response_curve()
Computes RR as a DR relationship - CURRENTLY NOT USED
assign_age_groups()
Assign age groups to individuals
beta_pointiness()
Parameterise confidence in PA data - CURRENTLY NOT IN USE
combined_rr_ap_pa()
Combine relative risks from air pollution and physical activity
combine_health_and_pif()
Combine health and potential impact fraction (PIF)
complete_trip_distance_duration()
Add missing trip information
create_bogota_scenarios()
Create scenarios for Bogota
create_global_scenarios()
Create global scenarios
create_base_pop()
Creates baseline population
dirichlet_pointiness()
Function for Dirichlet parameters
distances_for_injury_function()
Get distances and parameterise Poisson regression model for injuries
dist_dur_tbls()
Get distances and duration summaries by mode
extract_data_for_voi()
Get ITHIM-results into correct format for VoI analysis
gen_ap_rr()
Get relative risk for diseases given PM exposure
gen_pa_rr()
Get relative risk for diseases given mMETs
get_all_distances()
Find population distances by mode for entire population
get_scenario_settings()
Get values for mode share across distance categories and for max mode share scenario - CURRENTLY only used when calling summary_tables.Rmd
get_synthetic_from_trips()
Generate baseline population from trip data
health_burden()
Compute health burden
injuries_function_2()
Predict injuries
injury_death_to_yll()
Map injury death burden to YLL (years of life lost) burden
ithim_calculation_sequence()
Cascade of computations that form ITHIM-Global
ithim_load_data()
Load data for model and prepare input data for model
ithim_setup_baseline_scenario()
Set up baseline scenario data frame
ithim_setup_parameters()
Set parameters for ITHIM-Global run
ithim_uncertainty()
Sampling routine for running ITHIM with uncertainty
join_hb_and_injury()
Join disease health burden and injury data
scale_trip_distances()
Scale trip distances
scenario_co2_calculations()
Calculate total CO2 exposure per mode and scenario
scenario_pm_calculations()
Calculate total AP exposure per person
set_injury_contingency()
Injury summary statistics
set_scenario_specific_variables()
Set scenario specific variables - CURRENTLY NOT CALLED
set_vehicle_inventory()
Collate all vehicle information
total_mmet()
Calculate total mMETs per person
walk_to_pt_and_combine_scen()
Add walk to public transport stages